98c78568a8256b51c514e4fcf3d7c2ff *DESCRIPTION
5914d7f5dcce9b36f452e980ae11f324 *INDEX
82a4abbe3c8425fb298dc6fdea46aa10 *Meta/Rd.rds
d5cb3912557fb7bdac992cb3a8046e66 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
909bafa511d76963bb2e55b77670219a *Meta/hsearch.rds
29946906ebcc422ffd8c3cb3a6e4b1d7 *Meta/links.rds
14b9872b2c74394a72e42701550a5920 *Meta/nsInfo.rds
8220d22e9425d965d5f15f849e44faf7 *Meta/package.rds
b93b86b14a29818f0f27a3cec9502897 *Meta/vignette.rds
ea3b5e04b413d669250186ce5a94eb34 *NAMESPACE
c8d67c78439892d08d313c8d27aee89c *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/SCOPE
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15f46f5dfe10695599aea829271bfbe2 *R/SCOPE.rdx
b03d5d43d0cc5778a41dc36ba6d4261c *data/Rdata.rdb
680c43ea9a186d0d8e4516a9e2494ce3 *data/Rdata.rds
29f00f2bef91c61689d5cdba4b682a11 *data/Rdata.rdx
6cad9d4749270472762503ce60586cb6 *doc/SCOPE_vignette.R
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9d87a2f6f8a6873bd77ae7144aa844ee *doc/index.html
1e9c0988e992371032f30ee5ca2dbce3 *docs/split_script.py
c12183e4c7b3cfa9f504cb21e463adae *help/AnIndex
467be6c4d5bd9c083545b2ce4966980f *help/QCmetric.scopeDemo.html
57fe86ac8e7aca44533734c5e6c8fde5 *help/SCOPE.rdb
1cce14de804a375ef57c5b35f99e6676 *help/SCOPE.rdx
84f91ef1fc67b4a91090208c1507abbd *help/Y_sim.html
8310e130f02328edecc0dce395606bb2 *help/aliases.rds
382a7fccd6233335e63487948994eb25 *help/coverageObj.scopeDemo.html
c8b0e5d0a151d6b2e023ef8cc92c34b7 *help/get_bam_bed.html
947c33593052214a3064839fec280c4e *help/get_coverage_scDNA.html
d229f83197218cb836eca5ddddbac654 *help/get_gc.html
65595db188f291db72d728638f6eb7be *help/get_gini.html
b7945dddff261d29e017caf5c7093d84 *help/get_mapp.html
02ecdf8408934d16806b96d427b928f2 *help/get_samp_QC.html
868928e33cebd54c22d1917a4c88cd0b *help/iCN_sim.html
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c8f37bb4f56cb9aee787dc6a92aba27a *help/initialize_ploidy_group.html
b52061b51138a325ac948c1f8a5b8192 *help/normObj.scopeDemo.html
67bb9577aff818ca859abccf11c697f3 *help/normalize_codex2_ns_noK.html
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8e001e4ee6855b272eeabe4e19b5e175 *help/normalize_scope_group.html
895f4dd5f80cb042752a86c89a729368 *help/paths.rds
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948db10f7af61f436828718677f42158 *help/plot_EM_fit.html
96695a3fa60bc6b42fc93ffbcf6336f4 *help/plot_iCN.html
e0097e829a0c00f49232b6c0f844d95c *help/ref.scopeDemo.html
046f1096ef8f6b4f27f8afcd862c6534 *help/ref_sim.html
871d2b5dc91c1d2a0122185fdf4042e1 *help/segment_CBScs.html
52d6e91cfc40c65fa28f84a256585c7a *html/00Index.html
0b2fd71a5cc52333ee94aa6c30981439 *html/QCmetric.scopeDemo.html
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3c749e39ff16e540d944082e7803195f *html/Y_sim.html
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3b1b8906db5cc55c440e6180ca86cd1e *html/get_bam_bed.html
34422ec78d6781be51ff56fd7f5ecfec *html/get_coverage_scDNA.html
de2729a709822d9f70a21739571c92dc *html/get_gc.html
c580cdb382650ddde802a533180c190f *html/get_gini.html
07689ac1b584bf2a7e770a84821d3162 *html/get_mapp.html
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9593900af8243da73d3123012f11a01a *html/iCN_sim.html
4a0b78f483accd4ad1744e8dbcb28735 *html/initialize_ploidy.html
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4a7f8b5b2ea1319df0ac91a966a0ed83 *html/normObj.scopeDemo.html
b471db9c2bef4b9abdfaf3dcf2712a17 *html/normalize_codex2_ns_noK.html
5e1c47a37a895272190e6b7d218673ef *html/normalize_scope.html
10001bca6c4fd967bf4a3206ce4ef5fc *html/normalize_scope_foreach.html
57556d05cd2a1700fd74eabebf67cf86 *html/normalize_scope_group.html
9c7a8d288cc077b91519b59088413d25 *html/perform_qc.html
c7582a1a4f39f2a1e7d43c1304f7baa9 *html/plot_EM_fit.html
9eeddadfb105c035f5b85cd8aada4ec2 *html/plot_iCN.html
77e3f7f2c83ee4d99f0589c660cbd6cb *html/ref.scopeDemo.html
1875b0a8503252bac8c9f67f68344ef5 *html/ref_sim.html
500586368f73f6b51b9fb1993f28a7e8 *html/segment_CBScs.html
