Package: ReactomeGSA
Type: Package
Title: Client for the Reactome Analysis Service for comparative
        multi-omics gene set analysis
Version: 1.8.0
Authors@R: person("Johannes", "Griss", email = "johannes.griss@meduniwien.ac.at", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2206-9511"))
Description: The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics
    gene set analysis. The main advantage of this package is, that the retrieved results can be 
    visualized using REACTOME's powerful webapplication.
    Since Reactome's analysis service also uses R to perfrom the actual gene set
    analysis you will get similar results when using the same packages (such as limma and edgeR) locally.
    Therefore, if you only require a gene set analysis, different packages are more suited.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: jsonlite, httr, progress, ggplot2, methods, gplots,
        RColorBrewer, dplyr, tidyr
RoxygenNote: 7.1.2
Suggests: testthat, knitr, rmarkdown, ReactomeGSA.data, Biobase,
        devtools
Enhances: limma, edgeR, Seurat (>= 3.0), scater
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, Proteomics, Transcriptomics,
        SystemsBiology, GeneExpression, Reactome
BugReports: https://github.com/reactome/ReactomeGSA/issues
URL: https://github.com/reactome/ReactomeGSA
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: RELEASE_3_14
git_last_commit: 51c41bd
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 03:32:57 UTC; biocbuild
Author: Johannes Griss [aut, cre] (<https://orcid.org/0000-0003-2206-9511>)
Maintainer: Johannes Griss <johannes.griss@meduniwien.ac.at>
Built: R 4.1.1; ; 2021-10-27 12:56:32 UTC; windows
