sepScores {RTopper} | R Documentation

## A list of separate gene-to-phenotype association scores, obtained indipendently for each distinct data set to be used to run the examples in the RTopper package

### Description

A `list` containing distinct named `numeric` vectors corresponding to the gene-to-phenotype association scores resulting from the sepatate analysis of each data set. These separate gene-to-phenotype scores are compurted by `computeDrStat` function. Can be used as input to `runBatchGSE`.

### Usage

     data(sepScores)

### Format

This object is a `list` of length four, one element for data set:

`"dat.affy"`: a `numeric` vector of length 500, corresponding to the sepatate phenotype association scores computed for Affymetrix gene expression data;

`"dat.agilent"`: a `numeric` vector of length 500, corresponding to the separate phenotype association scores computed for Agilent gene expression data;

`"dat.cnvHarvard"`: a `numeric` vector of length 500, corresponding to the separate phenotype association scores computed for Harvard CNV data;

`"dat.cnvMskcc"`: a `numeric` vector of length 500, corresponding to the separate phenotype association scores computed for the MSKCC CNV data;

### Source

Computed using the `computeDrStat` function from the TCGA data contained in `data`.

### Examples

    data(sepScores)
    class(sepScores)
    names(sepScores)
    str(sepScores)

[Package RTopper version 1.40.1 Index]