installTCGA {RTCGA}

R Documentation

Install packages from RTCGA family

Description

Function installs data packages from https://github.com/RTCGA/. Packages are listed datasetsTCGA.

Usage

installTCGA(
  packages = c("RTCGA.clinical", "RTCGA.mutations", "RTCGA.rnaseq", "RTCGA.RPPA",
    "RTCGA.mRNA", "RTCGA.CNV", "RTCGA.miRNASeq", "RTCGA.PANCAN12", "RTCGA.methylation"),
  build_vignettes = TRUE,
  ...
)

Arguments

packages	A character specifing the names of the data packages to be installed. By default installs all packages.
build_vignettes	Should vignettes be build.
...	Further arguments passed to install_github.

Issues

If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.

Author(s)

Marcin Kosinski, m.p.kosinski@gmail.com

See Also

RTCGA website http://rtcga.github.io/RTCGA.

Other RTCGA: RTCGA-package, boxplotTCGA(), checkTCGA(), convertTCGA(), datasetsTCGA, downloadTCGA(), expressionsTCGA(), heatmapTCGA(), infoTCGA(), kmTCGA(), mutationsTCGA(), pcaTCGA(), readTCGA(), survivalTCGA(), theme_RTCGA()

Examples

## Not run: 
installTCGA()
installTCGA('RTCGA.clinical')

## End(Not run)

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