RGSEA-package {RGSEA}

R Documentation

Random Gene Set Enrichment Analysis (RGSEA)

Description

This is the package for similarity identifucation and classification of transcriptome data

Details

Package:	RGSEA
Type:	Package
Version:	1.0
Date:	2014-04-22
License:	GPL(>=3)

~~ An overview of how to use the package, including the most important functions ~~

Author(s)

Chengcheng Ma Maintainer: tcmcc1986@gmail.com

References

~~ Literature or other references for background information ~~

See Also

Song L, Langfelder P, Horvath S. Random generalized linear model: a highly accurate and interpretable ensemble predictor[J]. BMC bioinformatics, 2013, 14(1): 5. Subramanian A, Tamayo P, Mootha V K, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(43): 15545-15550.

Examples

if(interactive()) {
    data(e1)
    data(e2)
    RGSEAfix(e1,e2, queryclasses=colnames(e1), refclasses=colnames(e2),      
random=20000, featurenum=1000, iteration=100)->test
}

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