a7aab4ad3914280a56aaa0d04d600d3a *DESCRIPTION
0a61acbf94a0ebaee29414696e14d28b *INDEX
faf6466ae857c160b25f653c2371dce7 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
73086e9eda2c83714ccc33ce4dd5839f *Meta/hsearch.rds
13758fa0dc987ffd1c3a3db127576375 *Meta/links.rds
bcc24b965a1e6c936d0ebbf82bfaa113 *Meta/nsInfo.rds
bee54c8796eb5e342bfc48c90fcd0792 *Meta/package.rds
1e5ee10aaeb67c32d26d70f3b40dd82f *Meta/vignette.rds
16ede6ded73a34133a6aaff18608d3bf *NAMESPACE
6071ee9c682977cdaf522c777772296a *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/Onassis
52bad8c7f0f142e0a8c9cff2a77aec92 *R/Onassis.rdb
a134b4300e447e45fad2566273b57b04 *R/Onassis.rdx
79ada466dcc7969b5b974d49854ff244 *doc/Onassis.R
dfaa52478943a50733a58aae4c626f83 *doc/Onassis.Rmd
b27466b5bfdc6e84e37c2655138d9c86 *doc/Onassis.html
61a762fd195241dc87bb13a8a84f6018 *doc/index.html
e934df9e52563f3e4ebd5b5a15c5edcc *extdata/HistonesAndVariants.txt
a972ae24b13f68e18f42c9199c2577d5 *extdata/Options_table.rds
6d9b0c147710ce4a86f51cfb1b169e0f *extdata/cmDict-sample.cs.xml
baa93c8bbd5f5845f03619c7b506c814 *extdata/list_of_annotations.rds
26cefb70a5031c2a781e4a01756b5c07 *extdata/sample_granges.rds
5156e0d2abea73862c72e7c1228be7d5 *extdata/test_samples/test_samples.txt
cfe323b9b07aee5d937e7a44ba4f44a1 *extdata/vignette_data/GEO_human_chip.rds
e70c2260403d73213d5291702ef811b1 *extdata/vignette_data/GEOmethylation.rds
a629d377c3e91d7b2ceb9aca58b2c90b *extdata/vignette_data/experiment_types.rds
f889fa4082d152ca3821a797c38cffab *extdata/vignette_data/h3k27ac_metadata.rds
fb8991081574f687eaf976f97adbf36c *extdata/vignette_data/methylation_brenda_annot.rds
86d86c40e2bac27557cfb738958bfddf *extdata/vignette_data/organisms.rds
9948aaedaba1c5e97418dc29274b428c *extdata/vignette_data/pairwise_results.rds
081458e231ff164564e48e20c353bd4d *extdata/vignette_data/performances.rds
5de4a710637bce4eb5eb5a7c8cf64210 *extdata/vignette_data/samples_similarity.rds
93f47e95b38429865b886ea9ca1064ef *extdata/vignette_data/score_matrix.rds
38f1072738ed71edeb4cbb7380e83e78 *extdata/vignette_data/target_entities.rds
af60b6db89bf6f0ac09d9edf9bb9d4f1 *help/AnIndex
96ded824b21961fa6735e5b802fab429 *help/CMdictionary-class.html
62428d8b9f40508e2d5496f07ed76b81 *help/CMdictionary.html
c158cce785a9ed1953697202b05d85c1 *help/CMoptions-class.html
c8e3ebb2d55e4d6d0497c6029f3fed4c *help/CMoptions.html
e5b0270533e06037f63d20ce9f945cfa *help/CaseMatch,CMoptions-method.html
e5b0270533e06037f63d20ce9f945cfa *help/CaseMatch.html
4e529167f9d873496d93a2b438c25402 *help/EntityFinder-class.html
f2b16d9703f5d963331ec571efe4abba *help/EntityFinder.html
d2c1ced5a5d7eb9e0abe729d6591c991 *help/FindAllMatches,CMoptions-method.html
d2c1ced5a5d7eb9e0abe729d6591c991 *help/FindAllMatches.html
58ebd603352a36f8d5718bf894a1287d *help/GEOHandler-function.html
58ebd603352a36f8d5718bf894a1287d *help/GEOHandler-functions.html
c127b392c4d70522171e1e7557cd96ab *help/OnASSiS.html
06bc7604d300969422cd7e068e1ba026 *help/Onassis-class.html
c127b392c4d70522171e1e7557cd96ab *help/Onassis-package.html
cf4e207d5c05e0db45d1c480e3f5f738 *help/Onassis.rdb
4eb3db10be46af0533dc6392e27647f9 *help/Onassis.rdx
b2f713e7ee63084ba8b22445b8572d4c *help/OrderIndependentLookup,CMoptions-method.html
b2f713e7ee63084ba8b22445b8572d4c *help/OrderIndependentLookup.html
7d210b29fff3353d23e9eeedce87a59c *help/SearchStrategy,CMoptions-method.html
7d210b29fff3353d23e9eeedce87a59c *help/SearchStrategy.html
e3a9d5d6595a2b15a5dacf1dd4591b45 *help/Similarity-class.html
637af26218e4929a517587fb85545b68 *help/Similarity.html
917c8bb79120ef17c4730b49db4287c6 *help/Stemmer,CMoptions-method.html
917c8bb79120ef17c4730b49db4287c6 *help/Stemmer.html
e5dab436f47dba9927e83892f41caaec *help/StopWords,CMoptions-method.html
e5dab436f47dba9927e83892f41caaec *help/StopWords.html
34592ceff52ae2ee8d10e2c58ed358fa *help/SynonymType,CMoptions-method.html
34592ceff52ae2ee8d10e2c58ed358fa *help/SynonymType.html
d6ac6a07e2b2607a203b22948b7da735 *help/aliases.rds
621f48d9a943b99be530a19622b389bc *help/annotate,data.frame,character,character-method.html
621f48d9a943b99be530a19622b389bc *help/annotate.html
1ae19fcdd3571fe41e9879c967bd8ce2 *help/annotateDF,EntityFinder,data.frame,character,CMoptions-method.html
1ae19fcdd3571fe41e9879c967bd8ce2 *help/annotateDF.html
d041cee9175dde9c0fdc1dc491fbde1d *help/collapse,Onassis-method.html
d041cee9175dde9c0fdc1dc491fbde1d *help/collapse.html
4436abc03fd50eaef10d55fe997fb118 *help/compare,Onassis-method.html
4436abc03fd50eaef10d55fe997fb118 *help/compare.html
58ebd603352a36f8d5718bf894a1287d *help/connectToGEODB,.html
58ebd603352a36f8d5718bf894a1287d *help/connectToGEODB.html
39c323d1bc0d491ecbe9ed43cedae733 *help/dictInfo,CMdictionary-method.html
39c323d1bc0d491ecbe9ed43cedae733 *help/dictInfo.html
f008885664c48291e020dd981366a669 *help/dictRef,CMdictionary-method.html
f008885664c48291e020dd981366a669 *help/dictRef.html
33f53970328f52c2f3fe5ad1f5a8719f *help/dictTypes.html
a38c939b7b946e2ffb549781cf9c94eb *help/dict_location,CMdictionary-method.html
a38c939b7b946e2ffb549781cf9c94eb *help/dict_location.html
5bab262192752d3d86f5b788013a0e75 *help/dictionary,Onassis-method.html
5bab262192752d3d86f5b788013a0e75 *help/dictionary.html
74dd3d31a85cca4ed4d7633273af0e54 *help/entities,Onassis-method.html
74dd3d31a85cca4ed4d7633273af0e54 *help/entities.html
af9aeabea7ede32203fe06b4858f10db *help/experiment_types.html
428240008938594d654c90de5641b32d *help/filterTerms.html
d087436f5c4e1678ea182140e4d85e76 *help/filterconcepts,Onassis-method.html
d087436f5c4e1678ea182140e4d85e76 *help/filterconcepts.html
4f64e18475fa194167dd20a430b61f8c *help/findEntities,EntityFinder,character,logical,character,CMoptions,CMdictionary-method.html
4f64e18475fa194167dd20a430b61f8c *help/findEntities.html
ee400e6e90c2c8bfc257df7992a337a1 *help/findHealthy.html
a2489326a8660f02fb50195c27e127e2 *help/getGEOMetadata.html
de2633e969a5a2bb9051573a5d7dd1a7 *help/groupConfig,Similarity-method.html
de2633e969a5a2bb9051573a5d7dd1a7 *help/groupConfig.html
0f06e0a8949aa61a985a298ae6c8e2cc *help/groupsim,Similarity,character,character-method.html
0f06e0a8949aa61a985a298ae6c8e2cc *help/groupsim.html
b05ebcf73f62fc162674ea9312f35c78 *help/groupwiseConfigRef,Similarity-method.html
b05ebcf73f62fc162674ea9312f35c78 *help/groupwiseConfigRef.html
a1e7b964b55118ed94d23d6b6359fee6 *help/icConfig,Similarity-method.html
a1e7b964b55118ed94d23d6b6359fee6 *help/icConfig.html
034f8101da5841e975113c1c4670f752 *help/listCMOptions.html
ca8a019f0c21e4c2c71aafcf58252cf2 *help/listSimilarities.html
aabb2358ff65a57e2c4338edd8d0e75a *help/mergeonassis,Onassis,Onassis-method.html
aabb2358ff65a57e2c4338edd8d0e75a *help/mergeonassis.html
845b59f6ef96d460a4769faf82abc3b1 *help/multisim,list,list,character,character-method.html
845b59f6ef96d460a4769faf82abc3b1 *help/multisim.html
a9693c17b8338c8254770e43c4dc6759 *help/ontology,Similarity-method.html
a9693c17b8338c8254770e43c4dc6759 *help/ontology.html
8e24f855ad2e75d54abca68164059d80 *help/organism_types.html
91947f79c78727794e747097bbf5a285 *help/pairsim,Similarity,character,character-method.html
91947f79c78727794e747097bbf5a285 *help/pairsim.html
01dc0a00846d13c447d26ee999e7f232 *help/pairwiseConfig,Similarity-method.html
01dc0a00846d13c447d26ee999e7f232 *help/pairwiseConfig.html
b3554a0db24394c6dc5f3cfbbbf87b27 *help/pairwiseConfigRef,Similarity-method.html
b3554a0db24394c6dc5f3cfbbbf87b27 *help/pairwiseConfigRef.html
d3db9e1f19e52c0adc9c4c10ceaa05d0 *help/paramValueIndex,CMoptions-method.html
d3db9e1f19e52c0adc9c4c10ceaa05d0 *help/paramValueIndex.html
6fcd2ce18d98ea3f9276710a141bd9a9 *help/paths.rds
a15b7add037e7650566b535ed3ba303e *help/samplesim,Similarity,character,character,data.frame-method.html
a15b7add037e7650566b535ed3ba303e *help/samplesim.html
ac3bf28e11455fc4731b2c703fae9c67 *help/scores,Onassis-method.html
ac3bf28e11455fc4731b2c703fae9c67 *help/scores.html
c158cce785a9ed1953697202b05d85c1 *help/show,CMoptions-method.html
cf196fe2df4e79c3fa1f8ce7588bbd02 *help/sim,Onassis-method.html
cf196fe2df4e79c3fa1f8ce7588bbd02 *help/sim.html
0df0370dcc324cce15f1e848a86e97a2 *help/simil,Onassis-method.html
0df0370dcc324cce15f1e848a86e97a2 *help/simil.html
6375c778b73f8f2856d8f6849737b545 *help/similarityInstance,Similarity-method.html
6375c778b73f8f2856d8f6849737b545 *help/similarityInstance.html
b449a53257e6526fe5b684a844e54ebd *help/typeSystemRef,EntityFinder-method.html
b449a53257e6526fe5b684a844e54ebd *help/typeSystemRef.html
f754eb56964c7ff178914b7f03b00ee2 *html/00Index.html
7a642e99d8448817f945cf4aeb996a6b *html/CMdictionary-class.html
303ce34d7c044c19015c6e5204322055 *html/CMdictionary.html
ebb1580b56e85afd0349712437a4fb2a *html/CMoptions-class.html
1f753921457b895dbdffb44901e5a19d *html/CMoptions.html
24d94975d407e8b6366dc6bcbf0c9ef8 *html/CaseMatch.html
544f91b31e33e34c14d01b975fe05adf *html/EntityFinder-class.html
567c3bdfc2faf941fceb5ac3a32e20c8 *html/EntityFinder.html
382a8f2e1bb6a7838de30c9e8e757e4d *html/FindAllMatches.html
07a3b47c0426ed40e3cec178b42b8b84 *html/GEOHandler-functions.html
e152838a9c7d4ad7303f3398b16f9af5 *html/Onassis-class.html
ef64e57b488c754c40e87d110e92c26a *html/Onassis.html
e21b83d8287a4f9c5c68b2d12b5e999f *html/OrderIndependentLookup.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6fd8feb33f1b182de8286f33f496dfec *html/SearchStrategy.html
d564420454d607cc2ec4be48f0c08bd4 *html/Similarity-class.html
3c9677aa3c9c66a63fd58974a43ba272 *html/Similarity.html
644ef50758d72a7033396a5e1ce60acf *html/Stemmer.html
4c88ed4388bea1cded19fa30265abb56 *html/StopWords.html
3efa5b786a3dc1947aa89e8b318d93b8 *html/SynonymType.html
61b2d40c836420cd20a146d975025e51 *html/annotate.html
b39f5259ef993bf897a6e8790f7622fa *html/annotateDF.html
15a1d346a2dcda49d1f7da3ef2fc6406 *html/collapse.html
a5c4896332dda2ece498416537ab9e5d *html/compare.html
82a25c0f2fbd84b4dc614018de395399 *html/dictInfo.html
781a64477d203d6dc90a2d82e68bdb7a *html/dictRef.html
47c5aec542689d87dbafbb83e33991d9 *html/dictTypes.html
864c0f8b3732c031246f168a618a01d1 *html/dict_location.html
a890aa8cab1053c457c7fa652b8b8ca5 *html/dictionary.html
b4889d7470322cfb1797e353c6229a61 *html/entities.html
2d2e2c811e26e661962a449bc87966c9 *html/experiment_types.html
8ff103bbc89d2f23869806a0856fb99d *html/filterTerms.html
794e069c59b55988b6d98eb63da2fca9 *html/filterconcepts.html
a19ef7e352811ac3662ace5214775fdb *html/findEntities.html
d7bdecba292bda6a8032a75b95c0c8ff *html/findHealthy.html
42470e73d93e11aacda12b54f11873a2 *html/getGEOMetadata.html
4b40a19c877059f7e786bf412b0ddc3c *html/groupConfig.html
65431f96085bda6b8df6872b08fed80e *html/groupsim.html
80f3cd190208fc6664d8bb8159fc0760 *html/groupwiseConfigRef.html
45df7636ab89b207e43d3cc75219d432 *html/icConfig.html
ca630bfbd9a113213d522a4db1e40354 *html/listCMOptions.html
3210153021f26b27da9c8fd5e463bacd *html/listSimilarities.html
d104efac577106724205ebeada2e8d48 *html/mergeonassis.html
754c5d97ab1ab48e5e3ca9ceb9ef43ea *html/multisim.html
78bbb9bb44ac7ed1092d7782abfaaba5 *html/ontology.html
9f351cb10f752448d31e26b53578e330 *html/organism_types.html
88da0d32fe0eefdd0d01132d6908df39 *html/pairsim.html
9dae12b1ab25bcb537bf94a6c52b5f56 *html/pairwiseConfig.html
c3ee4f4ef88d17cf1ca68a63d9e26cb2 *html/pairwiseConfigRef.html
fff68abead77984cdff40f660ebd61f5 *html/paramValueIndex.html
023e58dd547fbe531bab37e100d6dc54 *html/samplesim.html
79a8f6d27c8ca7edc76c686d05cad04b *html/scores.html
df533ad76cbc9011232e77e010b84720 *html/sim.html
ad32e7895e6c08602718a536b62c9846 *html/simil.html
b717c58cb6a4a624997336ec675093d3 *html/similarityInstance.html
319cfc668fb748c14c38aa08151ae544 *html/typeSystemRef.html
763e25ee680724f4719581fc471e08f3 *java/App.java
