results {OUTRIDER} | R Documentation

## Accessor function for the 'results' object in an OutriderDataSet object.

### Description

This function assembles a results table of significant outlier events based on the given filter criteria. The table contains various information accumulated over the analysis pipeline.

### Usage

    results(object, ...)

    ## S4 method for signature 'OutriderDataSet'
    results(
      object,
      padjCutoff = 0.05,
      zScoreCutoff = 0,
      round = 2,
      all = FALSE,
      ...
    )

### Arguments

`object` | An OutriderDataSet object
`...` | Additional arguments, currently not used
`padjCutoff` | The significant threshold to be applied
`zScoreCutoff` | If provided additionally a z score threshold is applied
`round` | Can be TRUE, defaults to 2, or an integer used for rounding with `round` to make the output more user friendly
`all` | By default FALSE, only significant read counts are listed in the results. If TRUE all results are assembled resulting in a data.table of length samples x genes

### Value

A data.table where each row is an outlier event and the columns contain additional information about this event. Eg padj, l2fc

### Examples

    ods <- makeExampleOutriderDataSet()

    ods <- OUTRIDER(ods)

    res <- results(ods, all=TRUE)
    res

[Package OUTRIDER version 1.12.0 Index]