subsetCoverage {ORFik}

R Documentation

Subset GRanges to get coverage.

Description

GRanges object should be beforehand tiled to size of 1. This subsetting takes account for strand.

Usage

subsetCoverage(cov, y)

Arguments

cov	A coverage object from coverage()
y	GRanges object for which coverage should be extracted

Value

numeric vector of coverage of input GRanges object

See Also

Other features: computeFeaturesCage(), computeFeatures(), countOverlapsW(), disengagementScore(), distToCds(), distToTSS(), entropy(), floss(), fpkm_calc(), fpkm(), fractionLength(), initiationScore(), insideOutsideORF(), isInFrame(), isOverlapping(), kozakSequenceScore(), orfScore(), rankOrder(), ribosomeReleaseScore(), ribosomeStallingScore(), startRegionCoverage(), startRegion(), stopRegion(), translationalEff()

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