orfID {ORFik}

R Documentation

Get id's for each orf

Description

These id's can be uniqued by isoform etc, this is not supported by GenomicRanges.

Usage

orfID(grl, with.tx = FALSE)

Arguments

grl	a GRangesList
with.tx	a boolean, include transcript names, if you want unique orfs, so that they dont have duplicates from different isoforms, set it to FALSE.

Value

a character vector of ids, 1 per orf

See Also

Other ORFHelpers: defineTrailer(), longestORFs(), mapToGRanges(), startCodons(), startSites(), stopCodons(), stopSites(), txNames(), uniqueGroups(), uniqueOrder()

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