optimizeReads {ORFik}

R Documentation

Find optimized subset of valid reads

Description

Keep only the ones that overlap within the grl ranges. Also sort them in the end

Usage

optimizeReads(grl, reads)

Arguments

grl	a GRangesList or GRanges object
reads	a GRanges, GAlignment or GAlignmentPairs object

Value

the reads as GRanges, GAlignment or GAlignmentPairs

See Also

Other utils: bedToGR(), convertToOneBasedRanges(), export.bed12(), export.bigWig(), export.wiggle(), fimport(), findFa(), fread.bed(), readBam(), readBigWig(), readWig()

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