shifts.load {ORFik} | R Documentation

## Load the shifts from experiment

### Description

When you p-shift using the function shiftFootprintsByExperiment, you will get a list of shifts per library. To automatically load them, you can use this function. Defaults to loading pshifts, if you made a-sites or e-sites, change the path argument to ashifted/eshifted folder instead.

### Usage

    shifts.load(
      df,
      path = pasteDir(dirname(df$filepath[1]), "/pshifted/shifting_table.rds")
    )

### Arguments

`df` | an ORFik `experiment`
`path` | path to .rds file containing the shifts as a list, one list element per shifted bam file.

### Value

a list of the shifts, one list element per shifted bam file.

### See Also

Other pshifting: `changePointAnalysis()`, `detectRibosomeShifts()`, `shiftFootprintsByExperiment()`, `shiftFootprints()`, `shiftPlots()`

### Examples

    df <- ORFik.template.experiment()
    # subset on Ribo-seq
    df <- df[df$libtype == "RFP",]
    #shiftFootprintsByExperiment(df)
    #shifts.load(df)

[Package ORFik version 1.14.7 Index]