trimming.table {ORFik} | R Documentation

## Create trimming table

### Description

From fastp runs in ORFik alignment process

### Usage

    trimming.table(trim_folder)

### Arguments

`trim_folder` | folder of trimmed files, only reads fastp .json files

### Value

a data.table with 6 columns, raw_library (names of library), raw_reads (numeric, number of raw reads), trim_reads (numeric, number of trimmed reads), raw_mean_length (numeric, raw mean read length), trim_mean_length (numeric, trim mean read length).

### Examples

    # Location of fastp trimmed .json files
    trimmed_folder <- "path/to/libraries/trim/"
    #trimming.table(trimmed_folder)

[Package ORFik version 1.14.7 Index]