downstreamOfPerGroup {ORFik} | R Documentation

## Get rest of objects downstream (exclusive)

### Description

Per group get the part downstream of position. downstreamOfPerGroup(tx, stopSites(cds, asGR = TRUE)) will return the 3' utrs per transcript as GRangesList, usually used for interesting parts of the transcripts.

### Usage

    downstreamOfPerGroup(tx, downstreamOf)

### Arguments

`tx` | a `GRangesList`, usually of Transcripts to be changed
`downstreamOf` | a vector of integers, for each group in tx, where is the new start point of first valid exon. Can also be a GRangesList, then stopsites will be used.

### Details

If you want to include the points given in the region, use downstreamFromPerGroup

### Value

a GRangesList of downstream part

### See Also

Other GRanges: `assignFirstExonsStartSite()`, `assignLastExonsStopSite()`, `downstreamFromPerGroup()`, `upstreamFromPerGroup()`, `upstreamOfPerGroup()`

[Package ORFik version 1.14.7 Index]