hasHits {ORFik} | R Documentation

## Hits from reads

### Description

Finding GRanges groups that have overlap hits with reads Similar to

### Usage

    hasHits(grl, reads, keep.names = FALSE, overlaps = NULL)

### Arguments

`grl` | a `GRangesList` or GRanges object
`reads` | a GRanges, GAlignment or GAlignmentPairs object
`keep.names` | logical (F), keep names or not
`overlaps` | default NULL, if not null must be countOverlaps(grl, reads), input if you have it already.

### Value

a list of logicals, T == hit, F == no hit

[Package ORFik version 1.14.7 Index]