QCstats.plot {ORFik} | R Documentation

## Make plot of ORFik QCreport

### Description

From post-alignment QC relative to annotation, make a plot for all samples. Will contain among others read lengths, reads overlapping leaders, cds, trailers, mRNA / rRNA etc.

### Usage

    QCstats.plot(stats, output.dir = NULL, plot.ext = ".pdf", as_gg_list = FALSE)

### Arguments

`stats` | the experiment object or path to custom ORFik QC folder where a file called "STATS.csv" is located.
`output.dir` | NULL or character path, default: NULL, plot not saved to disc. If defined saves plot to that directory with the name "/STATS_plot.pdf".
`plot.ext` | character, default: ".pdf". Alternatives: ".png" or ".jpg".
`as_gg_list` | return as a list of ggplot objects instead of as a grob. Gives you more modification options.

### Value

the plot object, a grob of ggplot objects of the the statistics data

### Examples

    df <- ORFik.template.experiment()[3,]
    ## First make QC report
    # QCreport(df)
    ## Now you can get plot
    # QCstats.plot(df)

[Package ORFik version 1.14.7 Index]