getReactomeDiagram {NoRCE} | R Documentation

## Display the enriched Reactome diagram of the given Reactome pathway id. This function is specific to only one pathway id and identifies the enriched genes in the diagram.

### Description

Display the enriched Reactome diagram of the given Reactome pathway id. This function is specific to only one pathway id and identifies the enriched genes in the diagram.

### Usage

    getReactomeDiagram(mrnaObject, pathway, imageFormat)

### Arguments

`mrnaObject` | Output of enrichment results
`pathway` | Reactome pathway term
`imageFormat` | Image format of the diagram. Possible image formats are 'png', 'svg'

### Value

Shows reactome diagram marked with an enriched genes in a browser

### Examples

    br_enr<-reactomeEnrichment(genes = breastmRNA,org_assembly='hg19')

    getReactomeDiagram(mrnaObject = br_enr,pathway = br_enr@ID[1],
                       imageFormat = 'png')

[Package NoRCE version 1.6.0 Index]