get_chain_file {MungeSumstats}

R Documentation

Download chain file for liftover

Description

Download chain file for liftover

Usage

get_chain_file(
  build_conversion = c("hg38ToHg19", "hg19ToHg38"),
  ucsc_ref = c("hg19", "hg38"),
  save_dir = tempdir(),
  verbose = TRUE
)

Arguments

build_conversion	converting from what build to what? hg38ToHg19 or hg19ToHg38
ucsc_ref	converting from what? hg19 or hg38
save_dir	where is the chain file saved? Default is a temp directory
verbose	extra messages printed? Default is TRUE

Value

loaded chain file for liftover

Source

UCSC chain files

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