dt_to_granges {MungeSumstats}

R Documentation

Convert data.table to GRanges object

Description

Convert data.table to GRanges object

Usage

dt_to_granges(
  dat,
  style = c("NCBI", "UCSC"),
  chrom_col = "CHR",
  start_col = "POS",
  end_col = "POS"
)

Arguments

dat	data.table of genomic data
style	conversion to GRanges style, NCBI or UCSC
chrom_col	column for chromosome
start_col	column for start position
end_col	column for end position (is the same as start for snps)

Value

GRanges object of the genomic data

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