TrioSet {MinimumDistance}R Documentation

Deprecated constructor for TrioSet class

Description

The TrioSet class has been deprecated and may be removed in a future release.

Usage

TrioSet(
  pedigreeData = Pedigree(),
  sample.sheet,
  row.names = NULL,
  lrr,
  baf,
  featureData,
  cdfname,
  drop = TRUE,
  mindist = NULL,
  genome = c("hg19", "hg18")
)

Arguments

pedigreeData

an object of class Pedigree

sample.sheet

a data.frame containing metadata on the trios

row.names

a character vector providing row identifiers for the sample.sheet argument that match the names of the trios in the pedigreeData argument.

lrr

a matrix of log R ratios

baf

a matrix of B allele frequencies

featureData

a GenomeAnnotatedDataFrame object for the SNPs/nonpolymorphic markers

cdfname

character string indicating the annotation package used to extract physical position and chromosome of markers

drop

logical. When FALSE, the dimnames on the log R ratio and BAF arrays is set to NULL

mindist

can be either NULL or a matrix of the minimum distance

genome

character string providing the UCSC genome build

Value

TrioSet

[Package MinimumDistance version 1.38.0 Index]