DNAcopyParam {MinimumDistance}

R Documentation

Constructor for DNAcopyParam class

Description

Creates an instance of a parameter class for circular binary segmentation of the minimum distance and the log R ratios. Parameters in this object are passed to the segment function in the package DNAcopy.

Usage

DNAcopyParam(
  alpha = 0.01,
  min.width = 2L,
  undo.splits = c("none", "prune", "sdundo"),
  undo.SD = 3
)

Arguments

alpha	see segment
min.width	see segment
undo.splits	see segment
undo.SD	see segment

See Also

segment

Examples

segment_params <- DNAcopyParam(alpha=0.01)
params <- MinDistParam(dnacopy=segment_params)

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