show,diffAnalysisClass-method {MicrobiotaProcess}

R Documentation

method extensions to show for diffAnalysisClass or alphasample objects.

Description

method extensions to show for diffAnalysisClass or alphasample objects.

Usage

## S4 method for signature 'diffAnalysisClass'
show(object)

## S4 method for signature 'alphasample'
show(object)

## S4 method for signature 'MPSE'
show(object)

Arguments

object

object, diffAnalysisClass or alphasample class

Value

print info

Author(s)

Shuangbin Xu

Examples

## Not run: 
data(kostic2012crc)
kostic2012crc %<>% as.phyloseq()
head(phyloseq::sample_data(kostic2012crc),3)
kostic2012crc <- phyloseq::rarefy_even_depth(kostic2012crc,rngseed=1024)
table(phyloseq::sample_data(kostic2012crc)$DIAGNOSIS)
set.seed(1024)
diffres <- diff_analysis(kostic2012crc, classgroup="DIAGNOSIS",
                        mlfun="lda", filtermod="fdr",
                        firstcomfun = "kruskal.test",
                        firstalpha=0.05, strictmod=TRUE, 
                        secondcomfun = "wilcox.test",
                        subclmin=3, subclwilc=TRUE,
                        secondalpha=0.01, lda=3)
show(diffres)

## End(Not run)

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