plotHeatmap {MetaNeighbor}

R Documentation

Plots symmetric AUROC heatmap, clustering cell types by similarity.

Description

Plots symmetric AUROC heatmap, clustering cell types by similarity.

Usage

plotHeatmap(aurocs, cex = 1, margins = c(8, 8), ...)

Arguments

aurocs	A square AUROC matrix as returned by MetaNeighborUS.
cex	Size factor for row and column labels.
margins	Size of margins (for row and column labels).
...	Additional graphical parameters that are passed on to gplots::heatmap.2 (allows customization of the heatmap).

See Also

ggPlotHeatmap

Examples

data(mn_data)
var_genes = variableGenes(dat = mn_data, exp_labels = mn_data$study_id)
celltype_NV = MetaNeighborUS(var_genes = var_genes,
                             dat = mn_data,
                             study_id = mn_data$study_id,
                             cell_type = mn_data$cell_type)
plotHeatmap(celltype_NV)

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