report_mods {MSnID}

R Documentation

Lists modification masses in the MSnID object

Description

Parses out masses from the modification column and return them as table with counts.

Usage

    report_mods(object, ...)

Arguments

object	An instance of class "MSnID".
...	currently not used

Value

Counts of each modification mass listed in modification column.

Author(s)

Vladislav A Petyuk vladislav.petyuk@pnnl.gov

See Also

add_mod_symbol map_mod_sites

Examples

msnidObj <- MSnID(".")
mzids <- system.file("extdata","phospho.mzid.gz",package="MSnID")
msnidObj <- read_mzIDs(msnidObj, mzids)
# reports the masses and number of their occurences
report_mods(msnidObj)
# clean-up cache
unlink(".Rcache", recursive=TRUE)

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