accessions {MSnID}

R Documentation

Non-redundant list of accession (protein) identifiers

Description

Returns the non-redundant list of accession (protein) identifiers from the MSnID object. Most of the times accessions and proteins have the same meaning. However, there are cases, for example use of 6-frame stop-to-stop translation as FASTA file, where the entries are called with general term accessions rather then proteins. Currently, accessions and proteins have the same meaning in MSnID.

Usage

    accessions(object, ...)
    proteins(object, ...)

Arguments

object	An instance of class "MSnID".
...	ignored parameters

Value

Non-redundant list of accession (protein) identifiers.

Author(s)

Vladislav A Petyuk vladislav.petyuk@pnnl.gov

See Also

peptides

Examples

data(c_elegans)
head(accessions(msnidObj))
head(proteins(msnidObj))

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