areaEnrich {MOMA} | R Documentation

## aREA.enrich Compute aREA enrichment between all pairwise combinations of VIPER proteins and gene-level events

### Description

aREA.enrich Compute aREA enrichment between all pairwise combinations of VIPER proteins and gene-level events

### Usage

    areaEnrich(events.mat, vipermat, event.type, verbose)

### Arguments

`events.mat` | A Binary 0/1 matrix with columns as samples, and rows as proteins
`vipermat` | A VIPER network of inferred activity scores with columns as samples, and rows as proteins
`event.type` | Name of the event type for printing purposes
`verbose` | whether to print extra progress statements

### Value

A matrix of enrichment scores with rows as event/gene names and columns as VIPER protein names

[Package MOMA version 1.6.0 Index]