oncoprintPlot {MOMA} | R Documentation

## Function to plot genomic events in the style of oncoPrint/cBioPortal

### Description

Function to plot genomic events in the style of oncoPrint/cBioPortal

### Usage

    oncoprintPlot(
      summary.vec,
      snpmat.thisClus,
      amps.thisClus,
      dels.thisClus,
      fusions.thisClus,
      important.genes,
      band2gene,
      max.events,
      k
    )

### Arguments

`summary.vec` | : named vector of the counts, named 'Event name':'Type' where type is 'mut', 'amp', 'del', 'fus'. Mutations are in Entrez ID Amp/Deletion CNV events are in genomic band location
`snpmat.thisClus` | : SNP matrix subset to samples in current cluster
`amps.thisClus` | : CNV matrix subset to samples in current cluster (just amplifications)
`dels.thisClus` | : CNV matrix subset to samples in current cluster (just deletions)
`fusions.thisClus` | : Fusion matrix subset to samples in current cluster
`important.genes` | : well known genes to highlight in the analysis
`band2gene` | : mapping of genomic location IDs to gene name: vector of HUGO gene ids, named by genomic location
`max.events` | : maximum number of events to plot for the oncoplots
`k` | : current cluster number

### Value

oncoprint event plot

[Package MOMA version 1.6.0 Index]