getSpecificQTL {MAGAR} | R Documentation

## getSpecificQTL

### Description

This function returns the methQTL interactions specific for a result

### Usage

    getSpecificQTL(meth.qtl.res, meth.qtl.background, type = "SNP")

### Arguments

`meth.qtl.res` | An object of type `MethQTLResult-class` for which specific QTLs are to be obtained.
`meth.qtl.background` | The background set as a list of `MethQTLResult-class` objects.
`type` | The type of annotation to be overlapped. Needs to be `'SNP'`, `'CpG'` or `'cor.block'`

### Value

A `data.frame` of methQTL interactions sorted by the effect size.

### Author(s)

Michael Scherer

### Examples

    meth.qtl.res.1 <- loadMethQTLResult(system.file("extdata","MethQTLResult_chr18",package="MAGAR"))
    meth.qtl.res.2 <- meth.qtl.res.1
    res <- getSpecificQTL(meth.qtl.res.1,list(A=meth.qtl.res.1,B=meth.qtl.res.2),type="SNP")

[Package MAGAR version 1.2.0 Index]