Package: LACE
Version: 1.6.0
Date: 2021-10-02
Title: Longitudinal Analysis of Cancer Evolution (LACE)
Authors@R: c(person("Daniele", "Ramazzotti", role=c("aut"),email="daniele.ramazzotti@yahoo.com",
                comment = c(ORCID = "0000-0002-6087-2666")),
    person("Fabrizio","Angaroni",role=c("aut"),email="fabrizio.angaroni@unimib.it"),
    person("Davide","Maspero",role=c("cre","aut"),email="d.maspero@campus.unimib.it"),
    person("Alex","Graudenzi",role=c("aut"),email="alex.graudenzi@unimib.it"),
    person("Luca", "De Sano", role=c("aut"), email="luca.desano@gmail.com",
                comment = c(ORCID = "0000-0002-9618-3774")))
Depends: R (>= 4.1.0)
Imports: data.tree, graphics, grDevices, igraph, parallel,
        RColorBrewer, Rfast, stats, SummarizedExperiment, utils
Suggests: BiocGenerics, BiocStyle, testthat, knitr
Name: LACE: an R package for the inference of longitudinal cancer
        evolution models
Description: 
    LACE is an algorithmic framework that processes single-cell somatic mutation profiles from cancer samples collected at different time points and in distinct experimental settings, to produce longitudinal models of cancer evolution. The approach solves a Boolean Matrix Factorization problem with phylogenetic constraints, by maximizing a weighed likelihood function computed on multiple time points. 
Encoding: UTF-8
License: file LICENSE
URL: https://github.com/BIMIB-DISCo/LACE
BugReports: https://github.com/BIMIB-DISCo/LACE
biocViews: BiomedicalInformatics, SingleCell, SomaticMutation
RoxygenNote: 7.1.2
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/LACE
git_branch: RELEASE_3_14
git_last_commit: 4a9a702
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 02:14:02 UTC; biocbuild
Author: Daniele Ramazzotti [aut] (<https://orcid.org/0000-0002-6087-2666>),
  Fabrizio Angaroni [aut],
  Davide Maspero [cre, aut],
  Alex Graudenzi [aut],
  Luca De Sano [aut] (<https://orcid.org/0000-0002-9618-3774>)
Maintainer: Davide Maspero <d.maspero@campus.unimib.it>
Built: R 4.1.1; ; 2021-10-27 11:41:40 UTC; windows
