GetGOS_ALL {IntramiRExploreR}

R Documentation

Gene ontology for Target Genes.

Description

Gene ontology for Target Genes.

Usage

GetGOS_ALL(
  gene,
  GO = c("topGO"),
  term = c("GOTERM_BP_ALL", "GOTERM_MF_ALL", "GOTERM_CC_ALL"),
  geneIdType = "ALIAS",
  path = tempdir(),
  ontology = c("GO_BP", "GO_MF", "GO_CC"),
  filename
)

Arguments

gene	List A String or vector containing the Gene names.
GO	A String depicting the chosen GO tool. Choice is "topGO"
term	A String depicting the chosen term. Choices are "GOTERM_BP_ALL","GOTERM_MF_ALL", "GOTERM_CC_ALL".
geneIdType	Type of gene Id given as input. Default "ALIAS"
path	String. The path where the data is stored if TEXT=TRUE.
ontology	Ontology selection for topGO. Choices are "GO_BP","GO_MF","GO_CC".
filename	Name of the file to store Gene Ontology.

Value

Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.

Examples

## Not run: 
miR="dme-miR-12"
a<-Visualisation(miR,mRNA_type=c("GeneSymbol"),method=c("Both"),
   platform=c("Affy1"),thresh=100)
genes<-a$Target_GeneSymbol
GetGOS_ALL(genes,GO=c("topGO"),term=c("GO_BP"),path=tempdir(),
     filename="test")
 
## End(Not run)

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