PlotMeta {IRISFGM}

R Documentation

PlotMeta

Description

This function can plot figure based on numebr total count information and this step is for the quality control. we shoud exclude extreme value in data.

Usage

PlotMeta(object, ...)

.plotMeta(object = NULL)

## S4 method for signature 'IRISFGM'
PlotMeta(object = NULL)

Arguments

object	input IRIS-FGM object
...	other arguments passed to methods

Value

It will generate two violin plots regarding number of RNA count and identified gene number.

Examples

x <- matrix(rnorm(100),ncol = 10) 
colnames(x) <- paste0("cell",1:ncol(x))
rownames(x) <- paste0("gene",1:nrow(x))
my_meta <- data.frame(row.names = paste0("cell",1:ncol(x)),
cluster = c(rep("ClusterA",5),rep("ClusterB",5)))
object <- CreateIRISFGMObject(x)
object <- AddMeta(object, 
meta.info = my_meta)
PlotMeta(object)

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