plotChip-methods {HELP} | R Documentation

## Plot chip image (methods)

### Description

Methods for graphic display of spatially-linked data, particularly applicable for microarrays

### Methods

x = "missing", y = "missing", z = "missing"

  Handle empty function call

x = "matrix", y = "missing", z = "missing"

  Handle matrix input, extract information, and reinterpret function call with appropriate vectors

x = "ExpressionSet", y = "missing", z = "missing"

  Handle input of an object of class `ExpressionSet`. Derive both data and position information from a single object.

x = "ExpressionSet", y = "vector", z = "missing"

  Handle input of an object of class `ExpressionSet`. Derive position information from this object, but the corresponding data from vector input.

x = "ExpressionSet", y = "ExpressionSet", z = "missing"

  Handle input of two objects of class `ExpressionSet`. Derive position information and data from each one, respectively.

x = "vector", y = "vector", z = "ExpressionSet"

  Handle input of an object of class `ExpressionSet`. Derive data from this object, but the corresponding position information from vector input.

x = "vector", y = "vector", z = "vector"

  Handle input of three vectors. Derive X and Y positions and data from each one, respectively.

### Author(s)

Reid F. Thompson (rthompso@aecom.yu.edu), Mark Reimers (mreimers@vcu.edu)

### See Also

`plotChip`

[Package HELP version 1.52.0 Index]