readWhippetJNCfiles {GeneStructureTools}

R Documentation

Read in a list of whippet .jnc.gz files and format as a GRanges object

Description

Read in a list of whippet .jnc.gz files and format as a GRanges object

Usage

readWhippetJNCfiles(files)

Arguments

files

vector of *.jnc.gz file names

Value

GRanges object with junctions

Author(s)

Beth Signal

See Also

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, formatWhippetEvents, junctions, readCounts, readWhippetDIFFfiles, readWhippetDataSet, readWhippetPSIfiles, whippetTranscriptChangeSummary

Examples

whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
jncFiles <- whippetFiles[grep(".jnc", whippetFiles)]
whippetJNC <- readWhippetJNCfiles(jncFiles)

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