readWhippetDIFFfiles {GeneStructureTools}

R Documentation

Read in a list of whippet .diff.gz files and format as a data.frame

Description

Read in a list of whippet .diff.gz files and format as a data.frame

Usage

readWhippetDIFFfiles(files)

Arguments

files

vector of *.diff.gz file names

Value

data.frame with junction counts for all files

Author(s)

Beth Signal

See Also

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, formatWhippetEvents, junctions, readCounts, readWhippetDataSet, readWhippetJNCfiles, readWhippetPSIfiles, whippetTranscriptChangeSummary

Examples

whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)

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