junctions {GeneStructureTools}

R Documentation

Method junctions

Description

Method junctions

Usage

junctions(whippetDataSet)

## S4 method for signature 'whippetDataSet'
junctions(whippetDataSet)

Arguments

whippetDataSet

whippetDataSet generated from readWhippetDataSet()

Value

junctions GRanges object (originally from a whippet .jnc file)

See Also

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, formatWhippetEvents, readCounts, readWhippetDIFFfiles, readWhippetDataSet, readWhippetJNCfiles, readWhippetPSIfiles, whippetTranscriptChangeSummary

Examples

whippetFiles <- system.file("extdata","whippet/",
package = "GeneStructureTools")
wds <- readWhippetDataSet(whippetFiles)

junctions <- junctions(wds)

---