formatWhippetEvents {GeneStructureTools}

R Documentation

Format Whippet co-ordinates as a GRanges object

Description

Format Whippet co-ordinates as a GRanges object

Usage

formatWhippetEvents(whippet)

Arguments

whippet

data.frame containing event location information. May be generated by readWhippetDIFFfiles()

Value

GRanges object with events

Author(s)

Beth Signal

See Also

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, junctions, readCounts, readWhippetDIFFfiles, readWhippetDataSet, readWhippetJNCfiles, readWhippetPSIfiles, whippetTranscriptChangeSummary

Examples

whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)
whippetCoords <- formatWhippetEvents(whippetDiffSplice)

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