addBroadTypes {GeneStructureTools}

R Documentation

Change transcript biotypes to a broader set

Description

Change transcript biotypes to a broader set in a GRanges GTF object

Usage

addBroadTypes(gtf)

Arguments

gtf	GRanges object of the GTF

Value

GRanges object of the GTF with new transcript types

Author(s)

Beth Signal

See Also

Other gtf manipulation: UTR2UTR53, exonsToTranscripts, filterGtfOverlap, removeDuplicateTranscripts, removeSameExon, reorderExonNumbers

Examples

gtfFile <- system.file("extdata","example_gtf.gtf",
package = "GeneStructureTools")
gtf <- rtracklayer::import(gtfFile)
gtf <- addBroadTypes(gtf)

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