| parse_json_config {FLAMES} | R Documentation |
Convert a json configuration file into a named R list, grouped into sub lists according to their usage in the Flames pipeline.
parse_json_config(json_file)
json_file |
the file path to the JSON file to convert into an R list.
This can be the default FLAMES configuration file found using |
A named R list of the parameters in json_file. Subsections are: pipeline_parameters,
global_parameters, isoform_parameters, alignment_parameters, realign_parameters and
transcript_counting.
config <- get_default_config_file() ## Not run: parse_json_config(config) ## End(Not run)