filenamesFromOSW {DIAlignR} | R Documentation

## Get mzML filenames from osw RUN table.

### Description

Get mzML filenames from osw RUN table.

### Usage

    filenamesFromOSW(dataPath, pattern)

### Arguments

`dataPath` | (char) path to xics and osw directory.
`pattern` | (char) must be either *.osw or *merged.osw .

### Value

A dataframe with three columns:

`spectraFile` | (string) as mentioned in RUN table of osw files.
`spectraFileID` | (string) ID in RUN table of osw files.
`featureFile` | (string) Path to the feature file.

### Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-14

### Examples

    dataPath <- system.file("extdata", package = "DIAlignR")
    ## Not run:
    filenamesFromOSW(dataPath, "*.osw")
    filenamesFromOSW(dataPath, "*merged.osw")

    ## End(Not run)

[Package DIAlignR version 2.2.0 Index]