getTransitionsQuery {DIAlignR} | R Documentation

## Get transitions from a SQLite file

### Description

Query is generated to identify features and their transitions below a FDR cut-off from a run. Order of transition intensity is kept same as the order of their Ids in `getPrecursorsQuery`.

### Usage

    getTransitionsQuery(runType = "DIA_Proteomics")

### Arguments

`runType` | (char) This must be one of the strings "DIA_proteomics", "DIA_IPF", "DIA_Metabolomics".

### Value

SQL query to be searched.

### Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2020) + GPL-3 Date: 2020-11-15

### See Also

`fetchTransitionsFromRun, getPrecursorsQueryID, getPrecursorsQuery`

[Package DIAlignR version 2.2.0 Index]