masterXICs_DIAlignR {DIAlignR} | R Documentation

## Master fragment-ion chromatograms from two parents

### Description

Created merged XICs of peptide (ID = 4618) 14299_QFNNTDIVLLEDFQK/3 from two SWATH runs:
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML

### Usage

    masterXICs_DIAlignR

### Format

The format is similar to the output of childXICs. A list of two elements: First element contains six fragmentation chromatograms. The second element has aligned parent time-vectors and corresponding child time-vector. It has five columns:

indexAligned.ref

  (integer) aligned indices of reference run.

indexAligned.eXp

  (integer) aligned indices of experiment run.

tAligned.ref

  (numeric) aligned time-vector of reference run.

tAligned.eXp

  (numeric) aligned time-vector of experiment run.

alignedChildTime

  (numeric) aligned time-vector of master run.

### Source

File test_GenerateData.R has source code to generate the example data.

[Package DIAlignR version 2.2.0 Index]