get_ropenms {DIAlignR} | R Documentation

## Get ropenms handle

### Description

Python path can also be set using Sys.setenv(RETICULATE_PYTHON = pythonPath). Also, remove .Rhistory file to avoid conflict with previously used python version.

### Usage

    get_ropenms(pythonPath = NULL, condaEnv = NULL, useConda = TRUE)

### Arguments

`pythonPath` | (string) path of the python program that has pyopenms module.
`condaEnv` | (string) name of the conda environment that has pyopenms module.
`useConda` | (logical) TRUE: Use conda environment. FALSE: Use python through pythonPath.

### Value

(pyopenms module)

### Author(s)

Shubham Gupta, shubh.gupta@mail.utoronto.ca

ORCID: 0000-0003-3500-8152

License: (c) Author (2020) + GPL-3 Date: 2020-06-06

### Examples

    ## Not run:
      ropenms <- get_ropenms(condaEnv = "envName", useConda=TRUE)

    ## End(Not run)

[Package DIAlignR version 2.2.0 Index]