DEXSeq {DEXSeq} | R Documentation

## Performs the differential exon usage test in a single command

### Description

This function is a wrapper that calls the necessary functions to perform a differential exon usage test in a single command.

### Usage

      DEXSeq(object,
        fullModel=design(object),
        reducedModel = ~ sample + exon,
        BPPARAM=MulticoreParam(workers=1),
        fitExpToVar="condition", quiet=TRUE )

### Arguments

`object` | An DEXSeqDataSet object.
`fullModel` | The full model formula
`reducedModel` | Null model formula.
`BPPARAM` | A "BiocParallelParam" instance. See `?bplapply` for details.
`fitExpToVar` | A variable name contained in the sample data. The expression values will be fitted to this variable using the the formula " ~ sample + fitExpToVar * exon".
`quiet` | Whether to print messages at each step

### Value

A `DEXSeqResults` object.

### Examples

      ## Not run:
          data(pasillaDEXSeqDataSet, package="pasilla")
          dxr <- DEXSeq( dxd )

    ## End(Not run)

[Package DEXSeq version 1.40.0 Index]