counts {DEXSeq} | R Documentation

## Accessors for the 'counts' slot of a DEXSeqResults object.

### Description

The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (gene or the like), and one column for each sample.

### Usage

    ## S4 method for signature 'DEXSeqResults'
    counts(object,normalized=FALSE)

### Arguments

`object` | a `DEXSeqResults` object.
`normalized` | logical indicating whether or not to divide the counts by the size factors or normalization factors before returning (normalization factors always preempt size factors)

### Value

an integer matrix

### Examples

      data(pasillaDEXSeqDataSet, package="pasilla")
      head( counts( dxd ))

[Package DEXSeq version 1.40.0 Index]