function_run_diffcyt_full_pipeline {CyTOFpower}

R Documentation

Run diffcyt pipeline

Description

Run diffcyt pipeline

Usage

function_run_diffcyt_full_pipeline(
  onevariation,
  model = c("limma", "LMM"),
  effect = c("random", "fixed")
)

Arguments

onevariation	list, of simulated data (output of the function_wrapper_apply_simulation_nbtimes function).
model	character, model to run: "limma" or "LMM".
effect	character, effect: "random" or "fixed".

Details

Function to run diffcyt pipeline. We do not used the diffcyt function directly because of the limma model run differently with the effects.

Value

list with 2 slots: - model_fit: the model fit; - result_summary: results of the model for each marker.

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