8e8a4b387626f7b12f1f4d6a8a28a421 *DESCRIPTION
399bb5754c7078cc7a5d67cbb837ba94 *INDEX
a9061069e1493e94d4cd1fa2ef362ecb *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
e150d13362aa3de7f239351335f99156 *Meta/hsearch.rds
878e099a3ce1f5ec21f19cf220348804 *Meta/links.rds
b8cc6b39308cb29058534a191c2bfa7d *Meta/nsInfo.rds
35f5af91c42d5f9c0c6eca9dc2e23b73 *Meta/package.rds
eb65fcdffb2828771c73ac0e27aaabd7 *Meta/vignette.rds
8303d6db51fe9f001261f7ef489b558f *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/ChIPsim
f589d5be29c57dfbb2aa2f27d90a0d54 *R/ChIPsim.rdb
887f07a44bb6776c6b0e062fa1d2bc42 *R/ChIPsim.rdx
c25425b627d46a1ca3717bfbfd0ee6ab *doc/ChIPsimIntro.R
abaf8e8233a098a7474790b5417031c5 *doc/ChIPsimIntro.Rnw
675496b6d0af3632e4e4bc89b1a1ec98 *doc/ChIPsimIntro.pdf
46d856f88e579ff1581a874fdd914114 *doc/index.html
d74927c17468bfc71fd481ff5ef36b99 *help/AnIndex
64bf690b8c8718fded04aa6931f9835e *help/ChIPsim-package.html
64bf690b8c8718fded04aa6931f9835e *help/ChIPsim.html
c3559ffec87f326451a456c41680bf94 *help/ChIPsim.rdb
f1ac63d0e8924cae00ded7a6c6f4f997 *help/ChIPsim.rdx
cd1c5fa55125e9fae01500e30e153b42 *help/aliases.rds
8f353bac353634a2aee9da0141281268 *help/bindDens2readDens.html
9f8b53ee02f695421ab8f7c973028406 *help/bindLocDens.html
23bdeb0a0cf82a812cb82211f6800b3c *help/decodeQuality.html
92f290c55f1602dfa2c9c9d6e92d3cbd *help/defaultControl.html
28565cbb7e1bb046a2f64226d2d7b008 *help/defaultErrorProb.html
a7488eb59fd05f17c3880b8611c6da7a *help/defaultFunctions.html
9ad1cbdae48e71a016635268917c366e *help/defaultGenerator.html
9ad1cbdae48e71a016635268917c366e *help/defaultInit.html
9ad1cbdae48e71a016635268917c366e *help/defaultLastFeat.html
9ad1cbdae48e71a016635268917c366e *help/defaultTransition.html
9f8b53ee02f695421ab8f7c973028406 *help/distDens.html
23bdeb0a0cf82a812cb82211f6800b3c *help/encodeQuality.html
27de7ceda8f6278e7cb633f7e2fa037d *help/extractQuality.html
c06bc42b08e411171a71adadeb9c3c58 *help/feat2dens.html
e2bd4e57445c701c54443ebd04c323f0 *help/featureDensity.FuzzyFeature.html
e2bd4e57445c701c54443ebd04c323f0 *help/featureDensity.NFRFeature.html
e2bd4e57445c701c54443ebd04c323f0 *help/featureDensity.ReversePhasedFeature.html
e2bd4e57445c701c54443ebd04c323f0 *help/featureDensity.StableFeature.html
e2bd4e57445c701c54443ebd04c323f0 *help/featureDensity.StablePhasedFeature.html
e2bd4e57445c701c54443ebd04c323f0 *help/featureDensity.html
9f8b53ee02f695421ab8f7c973028406 *help/fragDens.html
36fe8be8c77e97d12e9ca3e25634fd67 *help/fuzzyFeature.html
9f8b53ee02f695421ab8f7c973028406 *help/indNuc.html
5d56e4777a0cb3e2be2a8d7a2571cab7 *help/internal.html
b00b69baa585340709fd0f923796ea3b *help/joinRegion.html
832c28374410bc8bd0b92d73dca5dabd *help/makeFeatures.html
36fe8be8c77e97d12e9ca3e25634fd67 *help/nfrFeature.html
9f8b53ee02f695421ab8f7c973028406 *help/noNuc.html
4a4331598193abf7e4e880291fca4eed *help/paths.rds
9f8b53ee02f695421ab8f7c973028406 *help/phaseNuc.html
36fe8be8c77e97d12e9ca3e25634fd67 *help/phasedFeature.html
9f755a01a707d1e49defc5059bc4c194 *help/placeFeatures.html
4a9b8ca30b99250dd8e1b3a696d68c8e *help/pos2fastq.html
e26686d0e64f1257f138a20cecd8a1f2 *help/readError.html
4f021bfebebabbf3672f679058c1196c *help/readQualitySample.html
aea621ba96f480cac7f4f9805d6ae5ef *help/readSequence.html
6ee903973eeeadbb85fff4e0abc546b1 *help/reconcileFeatures.NucleosomePosition.html
6ee903973eeeadbb85fff4e0abc546b1 *help/reconcileFeatures.SimulatedExperiment.html
6ee903973eeeadbb85fff4e0abc546b1 *help/reconcileFeatures.default.html
6ee903973eeeadbb85fff4e0abc546b1 *help/reconcileFeatures.html
5d56e4777a0cb3e2be2a8d7a2571cab7 *help/sampleFromFile.html
9f0ed258cc8ea544fb4bc89f8fb24bd8 *help/sampleReads.html
4465e78d6ec37ca6442be919988a9f4d *help/simChIP.html
3ba7f62cea9f39aada809fc560c1878d *help/simpleNames.html
5d56e4777a0cb3e2be2a8d7a2571cab7 *help/solexaNames.html
9f8b53ee02f695421ab8f7c973028406 *help/stableDens.html
36fe8be8c77e97d12e9ca3e25634fd67 *help/stableFeature.html
39ddc10d5668ef0827dbfc4ae055fec5 *help/writeFASTQ.html
5d56e4777a0cb3e2be2a8d7a2571cab7 *help/writeIllumina.html
3b7174ec2affbe8f0c7c0543d8593d2c *help/writeReads.html
419b9f0dc90d506cd7271dce45759c0e *html/00Index.html
6e60bd0dbbb7dbf8e9cebb4fcf3fbfea *html/ChIPsim-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
73d23609ef0e01a959a52ec7f8991920 *html/bindDens2readDens.html
23a4ed6355cfd4467a47ae9d70e2c851 *html/decodeQuality.html
81a5371eda92b855e2ce7075e9032e88 *html/defaultControl.html
aa80871946e1f3abd5714dfe38299424 *html/defaultErrorProb.html
3cdb9bf55bf98c6952de7efa80e3a599 *html/defaultFunctions.html
e701dc472ccca95f7ae60e062f1dbd3d *html/defaultGenerator.html
57af3e8871c0427e82ece3a7213576ee *html/distDens.html
5d187c71425ee03372975b879bed073d *html/extractQuality.html
709ae7bfd88c957d595f7c35d39c8b05 *html/feat2dens.html
b7274ce428ee216bc58898f9252fa45e *html/featureDensity.html
49b38b083c6105ad890d5fc2bd5a0024 *html/internal.html
48b3bb6f68cd155040a2fb7953cfb8cf *html/joinRegion.html
b53dae49214ea5e39e493813fccf2279 *html/makeFeatures.html
6639c8489e9821180534ccdbe0ee8384 *html/placeFeatures.html
f133b05562b4a801c487869542b1d14c *html/pos2fastq.html
011e7777be91a4356a1e96acf3c2ae20 *html/readError.html
d9f756b7045c60cb48102d3e53454ef4 *html/readQualitySample.html
f3d9f07d49fd613de23d1d675a35a75c *html/readSequence.html
3c1a4cdff68b8d2b3ed136417599e3b8 *html/reconcileFeatures.html
fac57a403c682d147b6b60637567b7aa *html/sampleReads.html
40849b619d7576f352edf29064e13343 *html/simChIP.html
b237c7fceea710f16ffce3c3d03c0146 *html/simpleNames.html
ea01aad1bf0e8c3c11f132572223bd9d *html/stableFeature.html
25f10d69897d57fa723a15f42d706a6b *html/writeFASTQ.html
eedd032a6ca930ae9ac3fc98625b3f2a *html/writeReads.html
