cluster_germline {CellaRepertorium}

R Documentation

Cluster contigs by germline properties

Description

Cluster contigs by germline properties

Usage

cluster_germline(
  ccdb,
  segment_keys = c("v_gene", "j_gene", "chain"),
  cluster_pk = "cluster_idx"
)

Arguments

ccdb	ContigCellDB()
segment_keys	fields in contig_tbl that identify a cluster
cluster_pk	name of cluster to be added to cluster_tbl

Value

ContigCellDB()

Examples

data(ccdb_ex)
ccdb_ex = cluster_germline(ccdb_ex)
ccdb_ex$cluster_tbl

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