82c00b01afab8cc7247470e55d2775e7 *CITATION
bcbe659bb1fac89d3d22314983721b61 *DESCRIPTION
7cba324e068e87cb387ecfb23ef44ab7 *INDEX
22ffb79a3bf178cace13d7517700b445 *Meta/Rd.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
9796b9146360b49671e9137e106ff146 *Meta/hsearch.rds
2efdb470de35de53b07cb1a3fe3c938b *Meta/links.rds
0c8fc08240193c666d5d887b94849f2f *Meta/nsInfo.rds
8748d83028b9f2c9a446408327e8b252 *Meta/package.rds
d71f083c74feb2d06bf6d84b3cc72ced *Meta/vignette.rds
aff5d3095281b8696bb8f8dbee94bf4e *NAMESPACE
571d6af29b43b04ce35483899ec9b0ca *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/CHRONOS
6ab92487204950c4c284a93e3a9915af *R/CHRONOS.rdb
4e6a551ea016a15f4722379f6804f4b8 *R/CHRONOS.rdx
5060cd035b4e479ec4b608a1cf513f95 *doc/CHRONOS.R
7cbdd0127ad5f77a0ee7c6ee3b48063a *doc/CHRONOS.Rmd
865e9f5ca54cec2294de1edbdadec34a *doc/CHRONOS.pdf
bbd1cd0230b600c08a5e70833ea2b9fb *doc/index.html
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Downloads/KEGG/hsa/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Downloads/KEGG/hsa/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Downloads/KEGG/hsa/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Downloads/KEGG/hsa/hsa05031.xml
5c86930303076b56fffb2124659ee722 *extdata/Downloads/mirbase/miRNAmaps_cel.RData
a0cb7ea78b15e55988d9ac247456bcbe *extdata/Downloads/mirbase/miRNAmaps_cfa.RData
20656607818c5a6e0f0999336c998947 *extdata/Downloads/mirbase/miRNAmaps_dme.RData
6ac71ed83a95d7c3be06257ba71cfe4c *extdata/Downloads/mirbase/miRNAmaps_dre.RData
d801f193d9043e618fc4db0cd5a12bab *extdata/Downloads/mirbase/miRNAmaps_gga.RData
848308837e8a4b8c8c9dda5b2b3b0338 *extdata/Downloads/mirbase/miRNAmaps_hsa.RData
f26276ab1d447631f168ed71619f0300 *extdata/Downloads/mirbase/miRNAmaps_mmu.RData
d886c18f5539936ff080e8a078f91513 *extdata/Downloads/mirbase/miRNAmaps_oar.RData
61f80721ee625b915c5e278e32f1878d *extdata/Downloads/mirbase/miRNAmaps_rno.RData
ba0338a0619071b90c76159b19b7dda0 *extdata/Examples/data.RData
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Examples/kgml/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Examples/kgml/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Examples/kgml/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Examples/kgml/hsa05031.xml
80be6b7034da70420088ae883e122025 *extdata/User/TarBase.xlsx
b73847dc20f74e19d50f266e54a900a9 *extdata/User/interestingGenes.txt
f5bd80c56bd4310f22a950f561b4db72 *extdata/User/mRNAexpressions.txt
6209f09eb733f87ac17256483bfcef3a *extdata/User/miRNAexpressions.txt
6da5e89fa7bb7b55bef94a3f3fbeb067 *extdata/User/miRecords.xlsx
67b9999ac058bfbe67206f9d90700dbe *help/AnIndex
42cce93fa9fde61ea0e1f8a256c93f61 *help/CHRONOS.rdb
e1b7e2de326357d32e8c5f380790cff7 *help/CHRONOS.rdx
ef11dc0a6fe3951d5bb86df662048336 *help/CHRONOSrun.html
fe745709a51b3768ab23a050b451b54a *help/aliases.rds
aeafda256f434bad3422c4e7885edb50 *help/convertMiRNANomenclature.html
70eb7e45e3e084df92558cd0c725523e *help/convertNomenclature.html
7748b18a2e74e2187069a4e92d27d105 *help/createPathwayGraphs.html
8497b191f7978d3a6af4113b381e810a *help/downloadKEGGPathwayList.html
fbe1d280c16419c5f22dbe5965378172 *help/downloadMiRecords.html
a316df19db3a794c4faa3c2f6040b910 *help/downloadPathways.html
2a5eda1bd7df28da4624eb6d61e45c5d *help/extractLinearSubpathways.html
05eabbf2cd7d3ff6771b844efadd88cf *help/extractNonLinearSubpathways.html
a1a8f825360e057943f4af72763a9f18 *help/getEdgeTypes.html
0f262530b820dba8a63cadaef7e0f795 *help/importExpressions.html
7a3e2abea40336b4400b99409e81653d *help/paths.rds
b1ffc43b72994360059d99ccc7365f9c *help/pathwayMeasures.html
bcc3181f7e02688eb54320b4560d52d2 *help/scoreSubpathways.html
9b373feb1b21f3f26f2780454d9206df *help/subpathwayKEGGmap.html
01beec8d351313480e667407d0743468 *help/subpathwayMiRNAs.html
a4d982b23f2a193dd1b0267611e2bf0a *help/visualizeResults.html
5cc3efd33f27b0072c619e975ff1f40c *html/00Index.html
e2f6f722b3853957996c3c404d27b1f3 *html/CHRONOSrun.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
bb1e57bcb56b99cb4a2ad49d6d6d2e9a *html/convertMiRNANomenclature.html
cd40c04885a5e4867358534b4c5ee605 *html/convertNomenclature.html
89e1e35efbc5d796adb863e6e15ffa6e *html/createPathwayGraphs.html
05a9aee181cbff61d460f806828018c9 *html/downloadKEGGPathwayList.html
7ae3e95f04f47bff6811fdeaa35dbc4e *html/downloadMiRecords.html
b748d5bf7f89c4ac5cb09acb8019034f *html/downloadPathways.html
e7c5fe37f7a8cc14e7ea17049fe3ae89 *html/extractLinearSubpathways.html
a9cef7b0641ba478d82ec1bea7881c8f *html/extractNonLinearSubpathways.html
0b44dbe29040a708d7baf1c68abc5f35 *html/getEdgeTypes.html
908ebd1168eac89d6d3f06f782cfae2a *html/importExpressions.html
88986a3f1bd6b651e94361b277d1d9a4 *html/pathwayMeasures.html
3867b024eeef03a1ee9ea961db7b9d5d *html/scoreSubpathways.html
0fe9734befcf132c990e8a66253a9d34 *html/subpathwayKEGGmap.html
c4ac5da77bbbb6610016ebb9c517bf44 *html/subpathwayMiRNAs.html
d37d34ca6a088e4bf9a573c0cb9c730c *html/visualizeResults.html
5b871fbb3592af29b328450307e42a72 *java/CHRONOS.jar
f26364f968916f546b7b86cf122f27c3 *unitTests/test_CHRONOSrun.R
4f7aefd3040ac2c26db999d47096f53d *unitTests/test_pathwayToGraph.R
3d1e948699f5b4b9d0c25fa99afce3c6 *unitTests/test_subExtractionLinear.R
b5a2804bef03d6cca7315e983cd6852d *unitTests/test_subExtractionNonLinear.R
8c9ceaeb0876827e50e9468aadb3f67b *unitTests/test_subRefinement.R
3100a07ec828065bfc818a701ef293e3 *unitTests/test_subVisualization.R
