seqNameTotalsSE {CAGEr}

R Documentation

Retreives the SummarizedExperiment containing chromosome expression totals.

Description

Get or set a SummarizedExperiment summarising whole-chromosome expression levels in the experiment slot seqNameTotals and the sample metadata of the CAGEexp object.

Usage

seqNameTotalsSE(object)

## S4 method for signature 'CAGEexp'
seqNameTotalsSE(object)

seqNameTotalsSE(object) <- value

Arguments

object	A CAGEexp object.
value	A SummarizedExperiment object where rows represent reference sequences such as chromosomes.

Author(s)

Charles Plessy

See Also

summariseChrExpr

Other CAGEr accessor methods: CTSSclusteringMethod(), CTSScoordinatesGR(), CTSScumulativesTagClusters(), CTSSnormalizedTpmDF(), CTSStagCountDF(), GeneExpDESeq2(), GeneExpSE(), consensusClustersGR(), expressionClasses(), genomeName(), inputFilesType(), inputFiles(), librarySizes(), sampleLabels(), tagClustersGR()

Examples

seqNameTotalsSE(exampleCAGEexp)

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