inputFiles {CAGEr}

R Documentation

Extracting paths to input files from CAGEr objects

Description

Extracts the paths to CAGE data input files from codeCAGEexp objects.

Usage

inputFiles(object)

## S4 method for signature 'CAGEexp'
inputFiles(object)

inputFiles(object) <- value

## S4 replacement method for signature 'CAGEexp'
inputFiles(object) <- value

Arguments

object	A CAGEexp object.
value	A character vector with one file path per sample.

Value

Returns a character vector of paths to CAGE data input files.

Author(s)

Vanja Haberle

Charles Plessy

See Also

Other CAGEr accessor methods: CTSSclusteringMethod(), CTSScoordinatesGR(), CTSScumulativesTagClusters(), CTSSnormalizedTpmDF(), CTSStagCountDF(), GeneExpDESeq2(), GeneExpSE(), consensusClustersGR(), expressionClasses(), genomeName(), inputFilesType(), librarySizes(), sampleLabels(), seqNameTotalsSE(), tagClustersGR()

Other CAGEr setter methods: genomeName(), inputFilesType(), sampleLabels(), setColors()

Examples

inputFiles(exampleCAGEexp)

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