expressionClasses {CAGEr}

R Documentation

Extract labels of expression classes

Description

Retrieves labels of expression classes of individual CTSSs or consensus clusters from a CAGEr object.

Usage

expressionClasses(object)

## S4 method for signature 'CTSS'
expressionClasses(object)

## S4 method for signature 'ConsensusClusters'
expressionClasses(object)

Arguments

object

A CAGEr object.

Value

Returns a Rle-encoded vector of labels of expression classes. The number of labels matches the number of expression clusters returned by getExpressionProfiles function.

See Also

Other CAGEr expression clustering functions: getExpressionProfiles(), plotExpressionProfiles()

Other CAGEr accessor methods: CTSSclusteringMethod(), CTSScoordinatesGR(), CTSScumulativesTagClusters(), CTSSnormalizedTpmDF(), CTSStagCountDF(), GeneExpDESeq2(), GeneExpSE(), consensusClustersGR(), genomeName(), inputFilesType(), inputFiles(), librarySizes(), sampleLabels(), seqNameTotalsSE(), tagClustersGR()

Examples

expressionClasses(CTSScoordinatesGR(exampleCAGEexp))
exampleCAGEexp |> consensusClustersGR() |> expressionClasses()

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