bam2CTSS {CAGEr}

R Documentation

bam2CTSS

Description

Converts from BAM to CTSS

Usage

bam2CTSS(gr, removeFirstG, correctSystematicG, genome)

Arguments

gr	A GRanges object returned by import.bam.
removeFirstG	See getCTSS().
correctSystematicG	See getCTSS().
genome	See coerceInBSgenome().

Details

Converts genomic ranges representing SAM/BAM alignments into a CTSS object.

Value

Returns a CTSS object.

See Also

Other loadFileIntoGPos: import.CTSS(), import.bam.ctss(), import.bam(), import.bedCTSS(), import.bedScore(), import.bedmolecule(), loadFileIntoGPos(), moleculesGR2CTSS()

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