GeneExpSE {CAGEr}

R Documentation

Retreives the SummarizedExperiment containing gene expression levels.

Description

Get or set a SummarizedExperiment using the gene expression data in the experiment slot geneExpMatrix and the sample metadata of the CAGEexp object.

Usage

GeneExpSE(object)

## S4 method for signature 'CAGEexp'
GeneExpSE(object)

Arguments

object

A CAGEexp object.

Author(s)

Charles Plessy

See Also

Other CAGEr accessor methods: CTSSclusteringMethod(), CTSScoordinatesGR(), CTSScumulativesTagClusters(), CTSSnormalizedTpmDF(), CTSStagCountDF(), GeneExpDESeq2(), consensusClustersGR(), expressionClasses(), genomeName(), inputFilesType(), inputFiles(), librarySizes(), sampleLabels(), seqNameTotalsSE(), tagClustersGR()

Examples

GeneExpSE(exampleCAGEexp)

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