CTSSclusteringMethod {CAGEr}

R Documentation

Get /set CTSS clustering method

Description

Returns or sets the name of the method that was used make tag clusters from the CTSSs of a CAGEr object.

Usage

CTSSclusteringMethod(object)

## S4 method for signature 'GRangesList'
CTSSclusteringMethod(object)

## S4 method for signature 'CAGEexp'
CTSSclusteringMethod(object)

CTSSclusteringMethod(object) <- value

## S4 replacement method for signature 'GRangesList'
CTSSclusteringMethod(object) <- value

## S4 replacement method for signature 'CAGEexp'
CTSSclusteringMethod(object) <- value

Arguments

object	A CAGEr object.
value	character

Author(s)

Vanja Haberle

Charles Plessy

See Also

clusterCTSS

Other CAGEr accessor methods: CTSScoordinatesGR(), CTSScumulativesTagClusters(), CTSSnormalizedTpmDF(), CTSStagCountDF(), GeneExpDESeq2(), GeneExpSE(), consensusClustersGR(), expressionClasses(), genomeName(), inputFilesType(), inputFiles(), librarySizes(), sampleLabels(), seqNameTotalsSE(), tagClustersGR()

Other CAGEr clusters functions: CTSScumulativesTagClusters(), CustomConsensusClusters(), aggregateTagClusters(), clusterCTSS(), consensusClustersDESeq2(), consensusClustersGR(), cumulativeCTSSdistribution(), plotInterquantileWidth(), quantilePositions(), tagClustersGR()

Examples

CTSSclusteringMethod(exampleCAGEexp)

---