librarySizes {CAGEr} | R Documentation

## Extracting library sizes from CAGEr objects

### Description

Extracts the library sizes (total number of CAGE tags) for all CAGE datasets from `CAGEexp` objects.

### Usage

    librarySizes(object)

    ## S4 method for signature 'CAGEexp'
    librarySizes(object)

### Arguments

`object` | A CAGEexp object.

### Details

Library sizes are calculated when loading data with the `getCTSS` function and stored in the `librarySizes` column of the `colData` of `CAGEexp` objects.

### Value

Returns an integer vector of total number of CAGE tags (library size) for all CAGE datasets in the CAGEr object.

### Author(s)

Vanja Haberle

### See Also

`getCTSS`

Other CAGEr accessor methods: `CTSSclusteringMethod()`, `CTSScoordinatesGR()`, `CTSScumulativesTagClusters()`, `CTSSnormalizedTpmDF()`, `CTSStagCountDF()`, `GeneExpDESeq2()`, `GeneExpSE()`, `consensusClustersGR()`, `expressionClasses()`, `genomeName()`, `inputFilesType()`, `inputFiles()`, `sampleLabels()`, `seqNameTotalsSE()`, `tagClustersGR()`

### Examples

    librarySizes(exampleCAGEexp)

[Package CAGEr version 2.0.2 Index]