CTSSclusteringMethod {CAGEr} | R Documentation

## Get /set CTSS clustering method

### Description

Returns or sets the name of the method that was used make tag clusters from the CTSSs of a `CAGEr` object.

### Usage

    CTSSclusteringMethod(object)

    ## S4 method for signature 'GRangesList'
    CTSSclusteringMethod(object)

    ## S4 method for signature 'CAGEexp'
    CTSSclusteringMethod(object)

    CTSSclusteringMethod(object) <- value

    ## S4 replacement method for signature 'GRangesList'
    CTSSclusteringMethod(object) <- value

    ## S4 replacement method for signature 'CAGEexp'
    CTSSclusteringMethod(object) <- value

### Arguments

`object` | A CAGEr object.
`value` | character

### Author(s)

Vanja Haberle

Charles Plessy

### See Also

`clusterCTSS`

Other CAGEr accessor methods: `CTSScoordinatesGR()`, `CTSScumulativesTagClusters()`, `CTSSnormalizedTpmDF()`, `CTSStagCountDF()`, `GeneExpDESeq2()`, `GeneExpSE()`, `consensusClustersGR()`, `expressionClasses()`, `genomeName()`, `inputFilesType()`, `inputFiles()`, `librarySizes()`, `sampleLabels()`, `seqNameTotalsSE()`, `tagClustersGR()`

Other CAGEr clusters functions: `CTSScumulativesTagClusters()`, `CustomConsensusClusters()`, `aggregateTagClusters()`, `clusterCTSS()`, `consensusClustersDESeq2()`, `consensusClustersGR()`, `cumulativeCTSSdistribution()`, `plotInterquantileWidth()`, `quantilePositions()`, `tagClustersGR()`

### Examples

    CTSSclusteringMethod(exampleCAGEexp)

[Package CAGEr version 2.0.2 Index]