plotExpressionProfiles {CAGEr} | R Documentation

## Plot CAGE expression profiles

### Description

Beanplot of distribution of normalized expression across CAGE experiments for individual expression classes, colored and labeled according to the information set when expression clustering was performed.

### Usage

    plotExpressionProfiles(object, what)

    ## S4 method for signature 'CAGEexp'
    plotExpressionProfiles(object, what = c("CTSS", "consensusClusters"))

### Arguments

`object` | A `CAGEr` object.
`what` | `CTSS` or `consensusClusters`.

### Details

The beanplots are shown in one labeled box per expression class. Each beanplot represents one CAGE experiment. The vertical axis represents scaled normalized expression. The color of each class is determined by the labels returned by expression clustering.

### Author(s)

Vanja Haberle

Charles Plessy

### See Also

Other CAGEr plot functions: `hanabiPlot()`, `plotAnnot()`, `plotCorrelation()`, `plotInterquantileWidth()`, `plotReverseCumulatives()`

Other CAGEr expression clustering functions: `expressionClasses()`, `getExpressionProfiles()`

### Examples

    plotExpressionProfiles(exampleCAGEexp, what = "CTSS")
    exampleCAGEexp |> plotExpressionProfiles("consensusClusters")

[Package CAGEr version 2.0.2 Index]