plot.hanabi {CAGEr} | R Documentation

## Plotting Hanabi objects

### Description

S3 method to plot hanabi objects. Used by the `hanabiPlot` function.

### Usage

    ## S3 method for class 'hanabi'
    plot(
      x,
      alpha = 0.5,
      col = "black",
      xlab = "Total counts",
      ylab = "Unique features",
      main = "Hanabi plot",
      pch = 1,
      ...
    )

    ## S3 method for class 'hanabi'
    points(x, ...)

    ## S3 method for class 'hanabi'
    lines(x, ...)

### Arguments

`x` | The hanabi object to plot.
`alpha` | The alpha transparency of the plot lines.
`col` | A vector indicating a color per sample (or a vector that can be recycled that way).
`xlab` | Horizontal axis label.
`ylab` | Vertical axis label.
`main` | Plot title.
`pch` | Plot character at the tip of the lines.
`...` | Other parameters passed to the generic plot, points or lines functions.

### Author(s)

Charles Plessy

### See Also

Other CAGEr richness functions: `hanabiPlot()`, `hanabi`

[Package CAGEr version 2.0.2 Index]