expressionClasses {CAGEr} | R Documentation

## Extract labels of expression classes

### Description

Retrieves labels of expression classes of individual CTSSs or consensus clusters from a `CAGEr` object.

### Usage

    expressionClasses(object)

    ## S4 method for signature 'CTSS'
    expressionClasses(object)

    ## S4 method for signature 'ConsensusClusters'
    expressionClasses(object)

### Arguments

`object` | A `CAGEr` object.

### Value

Returns a `Rle`-encoded vector of labels of expression classes. The number of labels matches the number of expression clusters returned by `getExpressionProfiles` function.

### See Also

Other CAGEr expression clustering functions: `getExpressionProfiles()`, `plotExpressionProfiles()`

Other CAGEr accessor methods: `CTSSclusteringMethod()`, `CTSScoordinatesGR()`, `CTSScumulativesTagClusters()`, `CTSSnormalizedTpmDF()`, `CTSStagCountDF()`, `GeneExpDESeq2()`, `GeneExpSE()`, `consensusClustersGR()`, `genomeName()`, `inputFilesType()`, `inputFiles()`, `librarySizes()`, `sampleLabels()`, `seqNameTotalsSE()`, `tagClustersGR()`

### Examples

    expressionClasses(CTSScoordinatesGR(exampleCAGEexp))
    exampleCAGEexp |> consensusClustersGR() |> expressionClasses()

[Package CAGEr version 2.0.2 Index]