seqNameTotalsSE {CAGEr} | R Documentation

## Retreives the SummarizedExperiment containing chromosome expression totals.

### Description

Get or set a `SummarizedExperiment` summarising whole-chromosome expression levels in the experiment slot `seqNameTotals` and the sample metadata of the `CAGEexp` object.

### Usage

    seqNameTotalsSE(object)

    ## S4 method for signature 'CAGEexp'
    seqNameTotalsSE(object)

    seqNameTotalsSE(object) <- value

### Arguments

`object` | A `CAGEexp` object.
`value` | A SummarizedExperiment object where rows represent reference sequences such as chromosomes.

### Author(s)

Charles Plessy

### See Also

summariseChrExpr

Other CAGEr accessor methods: `CTSSclusteringMethod()`, `CTSScoordinatesGR()`, `CTSScumulativesTagClusters()`, `CTSSnormalizedTpmDF()`, `CTSStagCountDF()`, `GeneExpDESeq2()`, `GeneExpSE()`, `consensusClustersGR()`, `expressionClasses()`, `genomeName()`, `inputFilesType()`, `inputFiles()`, `librarySizes()`, `sampleLabels()`, `tagClustersGR()`

### Examples

    seqNameTotalsSE(exampleCAGEexp)

[Package CAGEr version 2.0.2 Index]