GeneExpSE {CAGEr} | R Documentation

## Retreives the SummarizedExperiment containing gene expression levels.

### Description

Get or set a `SummarizedExperiment` using the gene expression data in the experiment slot `geneExpMatrix` and the sample metadata of the `CAGEexp` object.

### Usage

    GeneExpSE(object)

    ## S4 method for signature 'CAGEexp'
    GeneExpSE(object)

### Arguments

`object` | A `CAGEexp` object.

### Author(s)

Charles Plessy

### See Also

Other CAGEr accessor methods: `CTSSclusteringMethod()`, `CTSScoordinatesGR()`, `CTSScumulativesTagClusters()`, `CTSSnormalizedTpmDF()`, `CTSStagCountDF()`, `GeneExpDESeq2()`, `consensusClustersGR()`, `expressionClasses()`, `genomeName()`, `inputFilesType()`, `inputFiles()`, `librarySizes()`, `sampleLabels()`, `seqNameTotalsSE()`, `tagClustersGR()`

### Examples

    GeneExpSE(exampleCAGEexp)

[Package CAGEr version 2.0.2 Index]