inputFiles {CAGEr} | R Documentation

## Extracting paths to input files from CAGEr objects

### Description

Extracts the paths to CAGE data input files from codeCAGEexp objects.

### Usage

    inputFiles(object)

    ## S4 method for signature 'CAGEexp'
    inputFiles(object)

    inputFiles(object) <- value

    ## S4 replacement method for signature 'CAGEexp'
    inputFiles(object) <- value

### Arguments

`object` | A CAGEexp object.
`value` | A character vector with one file path per sample.

### Value

Returns a character vector of paths to CAGE data input files.

### Author(s)

Vanja Haberle

Charles Plessy

### See Also

Other CAGEr accessor methods: `CTSSclusteringMethod()`, `CTSScoordinatesGR()`, `CTSScumulativesTagClusters()`, `CTSSnormalizedTpmDF()`, `CTSStagCountDF()`, `GeneExpDESeq2()`, `GeneExpSE()`, `consensusClustersGR()`, `expressionClasses()`, `genomeName()`, `inputFilesType()`, `librarySizes()`, `sampleLabels()`, `seqNameTotalsSE()`, `tagClustersGR()`

Other CAGEr setter methods: `genomeName()`, `inputFilesType()`, `sampleLabels()`, `setColors()`

### Examples

    inputFiles(exampleCAGEexp)

[Package CAGEr version 2.0.2 Index]