bam2CTSS {CAGEr} | R Documentation

## bam2CTSS

### Description

Converts from BAM to CTSS

### Usage

    bam2CTSS(gr, removeFirstG, correctSystematicG, genome)

### Arguments

`gr` | A `GRanges` object returned by `import.bam`.
`removeFirstG` | See getCTSS().
`correctSystematicG` | See getCTSS().
`genome` | See coerceInBSgenome().

### Details

Converts genomic ranges representing SAM/BAM alignments into a CTSS object.

### Value

Returns a `CTSS` object.

### See Also

Other loadFileIntoGPos: `import.CTSS()`, `import.bam.ctss()`, `import.bam()`, `import.bedCTSS()`, `import.bedScore()`, `import.bedmolecule()`, `loadFileIntoGPos()`, `moleculesGR2CTSS()`

[Package CAGEr version 2.0.2 Index]