summariseChrExpr {CAGEr} | R Documentation

## Expression levels by chromosomes

### Description

Counts the number of molecules detected per chromosome, normalises by library size and stores the raw and normalised results in the `CAGEr` object.

### Usage

    summariseChrExpr(object)

    ## S4 method for signature 'CAGEexp'
    summariseChrExpr(object)

### Arguments

`object` | A `CAGEexp` object objects are not supported).

### Value

Modifies the `CAGEexp` by adding a “seqNameTotals” experiment containing matrices where rows represent chromosomes and columns represent samples.

### Author(s)

Charles Plessy

### See Also

seqNameTotals

Other CAGEr object modifiers: `CTSStoGenes()`, `CustomConsensusClusters()`, `aggregateTagClusters()`, `annotateCTSS()`, `clusterCTSS()`, `cumulativeCTSSdistribution()`, `getCTSS()`, `normalizeTagCount()`, `quantilePositions()`

### Examples

    summariseChrExpr(exampleCAGEexp)

[Package CAGEr version 2.0.2 Index]