drawBubbles {BubbleTree}

R Documentation

drawBubbles

Description

draw the Bubbles

Usage

drawBubbles(.Object, rbd, col = NULL)

## S4 method for signature 'BTreePlotter'
drawBubbles(.Object, rbd, col = "gray80")

Arguments

.Object	the object
rbd	the rbd object
col	the col value

Value

draw the bubbles on the track

Examples

load(system.file("data", "allCall.lst.RData", package="BubbleTree"))

btreeplotter <- new("BTreePlotter", max.ploidy=5, max.size=10)
nn <- "sam2"
rbd1 <- allCall.lst[[nn]]@rbd
rbd2 <- allCall.lst[[nn]]@rbd.adj
arrows <- trackBTree(btreeplotter, rbd1, rbd2, min.srcSize=0.01, 
                     min.trtSize=0.01)
btree <- drawBTree(btreeplotter, rbd1) + 
    drawBubbles(btreeplotter, rbd2, "gray80") + arrows

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