BioMM                   BioMM end-to-end prediction
BioMMstage2pred         Prediction performance for stage-2 data using
                        supervised machine learning
baseGLMnet              Prediction by generalized linear regression
                        models
baseModel               Base supervised machine learning models for
                        prediction
baseRandForest          Prediction by random forest
baseSVM                 Prediction by SVM
cirPlot4pathway         Circular plot for a set of pathways
classifiACC             Compute the classification accuracy
getDataByFilter         Return the data by feature filtering
getMetrics              Compute the machine learning evaluation metrics
omics2pathlist          Map individual probes into pathway
plotRankedFeature       Plot top outcome-associated features
plotVarExplained        Plot data summary statistics
predByBS                Bootstrap resampling prediction via supervised
                        machine learning with feature selection
predByCV                Cross validation prediction by supervised
                        machine learning and feature selection
predByFS                Prediction by supervised machine learning along
                        with feature selection
reconBySupervised       Reconstruct stage-2 data by supervised machine
                        learning prediction
reconByUnsupervised     Reconstruct stage-2 data by PCA
