Prepare cluster/deconvolve inputs from SingleCellExperiment object

Description

Prepare cluster/deconvolve inputs from SingleCellExperiment object

Usage

.prepare_inputs(
  sce,
  use.dimred = "PCA",
  d = 15,
  positions = NULL,
  position.cols = c("imagecol", "imagerow"),
  radius = NULL,
  xdist = NULL,
  ydist = NULL
)

Value

List of PCs, names of columns with x/y positions, and inter-spot distances