BCRANKresult-class {BCRANK} | R Documentation

## Class "BCRANKresult"

### Description

Holds the results from running `bcrank`. Contains a number of `BCRANKsearch-class` object, one for each restart of the bcrank search.

### Slots

`fname`:

  the name of the fasta file used for running bcrank.

`toplist`:

  a list of `BCRANKsearch-class` objects, ranked by their scores.

`funCall`:

  the function call that was made to bcrank.

`nrSeqs`:

  number of sequences in the fasta input file.

`restarts`:

  number of restarts used in the bcrank search.

### Methods

fname

  `signature(object = "BCRANKmatch")`: Returns the fasta file name.

toplist

  `signature(object = "BCRANKmatch", i=NULL)`: If `i` is NULL, returns a data frame containing consensus and score for the results for each restart of the bcrank search. Otherwise, the i'th `BCRANKsearch-class` object in the toplist is returned.

### Author(s)

Adam Ameur, adam.ameur@genpat.uu.se

### See Also

`bcrank`, `BCRANKsearch-class`,

[Package BCRANK version 1.56.0 Index]