as.data.frame,BASiCS_ResultsDE-method {BASiCS} | R Documentation

## Converting BASiCS results objects to data.frames

### Description

Converting BASiCS results objects to data.frames

### Usage

    ## S4 method for signature 'BASiCS_ResultsDE'
    as.data.frame(x, Parameter, Filter = TRUE, ProbThreshold = NULL)

    ## S4 method for signature 'BASiCS_ResultDE'
    as.data.frame(x, Filter = TRUE, ProbThreshold = NULL)

    ## S4 method for signature 'BASiCS_ResultVG'
    as.data.frame(x, Filter = TRUE, ProbThreshold = NULL)

### Arguments

`x` | An object of class BASiCS_ResultVG, BASiCS_ResultDE, or BASiCS_ResultsDE.
`Parameter` | For BASiCS_ResultsDE objects only. Character scalar specifying which table of results to output. Available options are "Mean", (mu, mean expression), "Disp" (delta, overdispersion) and "ResDisp" (epsilon, residual overdispersion).
`Filter` | Logical scalar. If `TRUE`, output only entries corresponding to genes that pass the decision rule used in the probabilistic test.
`ProbThreshold` | Only used if `Filter=TRUE`. Numeric scalar specifying the probability threshold to be used when filtering genes. Default is to use the threshold used in the original decision rule when the test was performed.

### Value

A data.frame of test results.

[Package BASiCS version 2.6.0 Index]